Articles | Volume 2, issue 4
https://doi.org/10.5194/soil-2-659-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
https://doi.org/10.5194/soil-2-659-2016
© Author(s) 2016. This work is distributed under
the Creative Commons Attribution 3.0 License.
the Creative Commons Attribution 3.0 License.
Original research article
| 
15 Dec 2016
Original research article |
| 15 Dec 2016
Three-dimensional soil organic matter distribution, accessibility and microbial respiration in macroaggregates using osmium staining and synchrotron X-ray computed tomography
Barry G. Rawlins
CORRESPONDING AUTHOR
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
Joanna Wragg
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
Christina Reinhard
Diamond Light Source, Harwell Science & Innovation Campus, Chilton, OX11 0DE, UK
Robert C. Atwood
Diamond Light Source, Harwell Science & Innovation Campus, Chilton, OX11 0DE, UK
Alasdair Houston
SIMBIOS, Abertay University, 40 Bell Street, Dundee DD1 1HG, UK
R. Murray Lark
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
Sebastian Rudolph
British Geological Survey, Keyworth, Nottingham, NG12 5GG, UK
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29 citations as recorded by crossref.
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- Heterotrophic bacterial production measured on soil microaggregates sampled using a Biological Laser Printer M. Montgomery et al. 10.1016/j.soilbio.2019.01.003
- Contrast-enhanced repacked soil cores as a proxy for soil organic matter spatial arrangement I. Piccoli et al. 10.1071/SR18191
- Dynamic interactions at the mineral–organic matter interface M. Kleber et al. 10.1038/s43017-021-00162-y
- Influence of Pore Characteristics on the Fate and Distribution of Newly Added Carbon M. Quigley et al. 10.3389/fenvs.2018.00051
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al. 10.1111/ejss.13256
- Potential of combined neutron and X‐ray imaging to quantify local carbon contents in soil J. Koestel et al. 10.1111/ejss.13178
- An improved method to identify osmium-stained organic matter within soil aggregate structure by electron microscopy and synchrotron X-ray micro-computed tomography M. Arai et al. 10.1016/j.still.2019.04.010
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- Probing the nature of soil organic matter Z. Weng et al. 10.1080/10643389.2021.1980346
- Persistence of soil organic carbon caused by functional complexity J. Lehmann et al. 10.1038/s41561-020-0612-3
- Generic tool for numerical simulation of transformation-diffusion processes in complex volume geometric shapes: Application to microbial decomposition of organic matter O. Monga et al. 10.1016/j.cageo.2022.105240
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- Architecture of soil microaggregates: Advanced methodologies to explore properties and functions W. Amelung et al. 10.1002/jpln.202300149
- The microbial habitat in soil: Scale, heterogeneity and functional consequences N. Nunan 10.1002/jpln.201700184
- Chemical staining of particulate organic matter for improved contrast in soil X-ray µCT images P. Maenhout et al. 10.1038/s41598-020-79681-5
- Testing Contrast Agents to Improve Micro Computerized Tomography (μCT) for Spatial Location of Organic Matter and Biological Material in Soil D. Lammel et al. 10.3389/fenvs.2019.00153
- Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain P. Baveye et al. 10.3389/fmicb.2018.01929
- Methods for Studying Bacterial–Fungal Interactions in the Microenvironments of Soil E. Mandolini et al. 10.3390/app11199182
- Shifting relationships between SOC and molecular diversity in soils of varied carbon concentrations: Evidence from drained wetlands Y. Wang et al. 10.1016/j.geoderma.2023.116459
- Interactions among soil texture, pore structure, and labile carbon influence soil carbon gains J. Lee et al. 10.1016/j.geoderma.2023.116675
- Testing Os Staining Approach for Visualizing Soil Organic Matter Patterns in Intact Samples via X-ray Dual-Energy Tomography Scanning H. Zheng et al. 10.1021/acs.est.0c01028
- Three-dimensional soil organic matter distribution, accessibility and microbial respiration in macroaggregates using osmium staining and synchrotron X-ray computed tomography B. Rawlins et al. 10.5194/soil-2-659-2016
- Afforestation With Different Tree Species Causes a Divergent Evolution of Soil Profiles and Properties G. Morazzo et al. 10.3389/ffgc.2021.685827
27 citations as recorded by crossref.
- Land use impact on carbon mineralization in well aerated soils is mainly explained by variations of particulate organic matter rather than of soil structure S. Schlüter et al. 10.5194/soil-8-253-2022
- Scenario modelling of carbon mineralization in 3D soil architecture at the microscale: Toward an accessibility coefficient of organic matter for bacteria B. Mbé et al. 10.1111/ejss.13144
- Aggregation but Not Organo‐Metal Complexes Contributed to C Storage in Tidal Freshwater Wetland Soils C. Maietta et al. 10.2136/sssaj2018.05.0199
- Heterotrophic bacterial production measured on soil microaggregates sampled using a Biological Laser Printer M. Montgomery et al. 10.1016/j.soilbio.2019.01.003
- Contrast-enhanced repacked soil cores as a proxy for soil organic matter spatial arrangement I. Piccoli et al. 10.1071/SR18191
- Dynamic interactions at the mineral–organic matter interface M. Kleber et al. 10.1038/s43017-021-00162-y
- Influence of Pore Characteristics on the Fate and Distribution of Newly Added Carbon M. Quigley et al. 10.3389/fenvs.2018.00051
- Understanding the joint impacts of soil architecture and microbial dynamics on soil functions: Insights derived from microscale models V. Pot et al. 10.1111/ejss.13256
- Potential of combined neutron and X‐ray imaging to quantify local carbon contents in soil J. Koestel et al. 10.1111/ejss.13178
- An improved method to identify osmium-stained organic matter within soil aggregate structure by electron microscopy and synchrotron X-ray micro-computed tomography M. Arai et al. 10.1016/j.still.2019.04.010
- Bridging Microbial Functional Traits With Localized Process Rates at Soil Interfaces E. Blagodatskaya et al. 10.3389/fmicb.2021.625697
- Dynamic upscaling of decomposition kinetics for carbon cycling models A. Chakrawal et al. 10.5194/gmd-13-1399-2020
- Patterns and Sources of Spatial Heterogeneity in Soil Matrix From Contrasting Long Term Management Practices M. Quigley et al. 10.3389/fenvs.2018.00028
- Probing the nature of soil organic matter Z. Weng et al. 10.1080/10643389.2021.1980346
- Persistence of soil organic carbon caused by functional complexity J. Lehmann et al. 10.1038/s41561-020-0612-3
- Generic tool for numerical simulation of transformation-diffusion processes in complex volume geometric shapes: Application to microbial decomposition of organic matter O. Monga et al. 10.1016/j.cageo.2022.105240
- Microscale carbon distribution around pores and particulate organic matter varies with soil moisture regime S. Schlüter et al. 10.1038/s41467-022-29605-w
- Opportunities and limits in imaging microorganisms and their activities in soil microhabitats C. Védère et al. 10.1016/j.soilbio.2022.108807
- Architecture of soil microaggregates: Advanced methodologies to explore properties and functions W. Amelung et al. 10.1002/jpln.202300149
- The microbial habitat in soil: Scale, heterogeneity and functional consequences N. Nunan 10.1002/jpln.201700184
- Chemical staining of particulate organic matter for improved contrast in soil X-ray µCT images P. Maenhout et al. 10.1038/s41598-020-79681-5
- Testing Contrast Agents to Improve Micro Computerized Tomography (μCT) for Spatial Location of Organic Matter and Biological Material in Soil D. Lammel et al. 10.3389/fenvs.2019.00153
- Emergent Properties of Microbial Activity in Heterogeneous Soil Microenvironments: Different Research Approaches Are Slowly Converging, Yet Major Challenges Remain P. Baveye et al. 10.3389/fmicb.2018.01929
- Methods for Studying Bacterial–Fungal Interactions in the Microenvironments of Soil E. Mandolini et al. 10.3390/app11199182
- Shifting relationships between SOC and molecular diversity in soils of varied carbon concentrations: Evidence from drained wetlands Y. Wang et al. 10.1016/j.geoderma.2023.116459
- Interactions among soil texture, pore structure, and labile carbon influence soil carbon gains J. Lee et al. 10.1016/j.geoderma.2023.116675
- Testing Os Staining Approach for Visualizing Soil Organic Matter Patterns in Intact Samples via X-ray Dual-Energy Tomography Scanning H. Zheng et al. 10.1021/acs.est.0c01028
2 citations as recorded by crossref.
- Three-dimensional soil organic matter distribution, accessibility and microbial respiration in macroaggregates using osmium staining and synchrotron X-ray computed tomography B. Rawlins et al. 10.5194/soil-2-659-2016
- Afforestation With Different Tree Species Causes a Divergent Evolution of Soil Profiles and Properties G. Morazzo et al. 10.3389/ffgc.2021.685827
Saved (preprint)
Latest update: 19 Apr 2024
Short summary
We do not understand processes by which soil bacteria and fungi feed on soil organic matter (SOM). Previous research suggests the location of SOM in aggregates may influence whether bacteria can feed on it more easily. We did an experiment to identify the distribution of SOM on very small scales within nine soil aggregates. There was no clear evidence that the distribution of organic matter influenced how easily the organic matter was fed upon by bacteria.
We do not understand processes by which soil bacteria and fungi feed on soil organic matter...
